Good day
I am trying to import .xml files generated with diamond into Megan6 verison 6_18_10. However, after import the file is empty, I saw another topic on this same issue, they have mentioned there is another version available to solve this problem. Where am I able to find this version, 6_18_6. I am also having issues with .daa files, in this Megan6 verison I am using, have another post under user questions on this.
Regards
Sunette
Please use DAA format rather than XML format. This leads to much smaller files and processing of DAA files by MEGAN is much faster than processing of XML files. If you require XML files for other purposes, you can always create an XML file from a DAA file using Diamond’s view command.
How do I get functional annotations from a DAA file? By importing DAA files, I only get taxonomic data, no functional data, even by using the latest mapping file available on the Megan6 download page.
Regards
Sunette
Can you show what the appears in the message window? Perhaps you didn’t set them up?
Good day
I have uploaded 2 images. The one is the window showing that I did select all of the functional annotations before meganizing. The second image is the window when you select for example Kegg, seed etc. This is basically all I can see, I am not able to see when selecting one link on the left, I am unable to see anything on the tree. The tree in the image, that is all I see on the tree, even by selecting pathways on the left.
Regards
Sunette
The image shows top level nodes of the interpro2go hierarchy. Select the node of interest on the right side of the window and use the context menu or Tree menu to uncollapse the node to see more detailed nodes
