Using --longReads, the y-axis still shows "number of reads" for functional annotations

When using --longReads with the meganizing tool, taxonomical results in MEGAN will correctly be displayed as “number of aligned bases”, while for functional annotations (I tried KEGG) the y-axis will display “number of reads”.

Are you referring to the charts that MEGAN produces? Like this one:

If so, please note that yesterday I uploaded a new release of MEGAN that fixes this problem…

Yes, that’s what I meant. Thanks for the update fixing this!