When extracting KEGG annotation results using MEGAN 6 UE, the output results indicates that 7,831 KEGG categories were annotated. However, why does the file only contain a dozen or so lines?
Hi @mullermeta ,
Could you please share the steps you used to generate the output file, or the meganized DAA file itself? It would be really helpful for me to review the process and results.
Best regards,
Anupam
this is my steps
~/megan/tools/daa-meganizer -i cds300_wrgbhybrid_annotation.daa -mdb ~/learn/learn/metagenomics/metagenomics/database/megan/megan-map-Feb2022-ue.db -supp 0
~/megan/tools/daa2info -i cds300_wrgbhybrid_annotation.daa -o kegg300hybrid_out -l -m -r2c KEGG -p true -r true
The license I am using is a 30-day trial license.
Dear @mullermeta,
One possible explanation could be that some features of MEGAN are limited in the trial license, including the number of entries that can be exported. You might consider reaching out directly to Computomics regarding this, as there have been discussions about implementing such limitations.
If they confirm that there are no restrictions, we can then look into this as a potential bug.
Best regards,
Anupam
fine,thanks to your answer