Running batch analysis through megan

User Questions
1

Hello,
I am very new to Megan and I wanted to run a batch analysis. I git cloned the link, ‘https://github.com/danielhuson/megan-ce.git’ in my directory on server and gave this command, ‘megan-ce/tools/daa2rma -i {input.daa} -o {output} -g2t {input.gi2taxid} -g2kegg {input.kegg} -fun KEGG’. However it shows the following error, ‘Error: Could not find or load main class megan.tools.DAA2RMA6’.

Can anyone please help me rectify this?
Thanks!

2

Download the installer from http://ab.inf.uni-tuebingen.de/data/software/megan6/download/welcome.html
and you will find the program here:

megan/tools/daa2rma

However, I recommend that you use

megan/tools/daa-meganizer

instead

3

Thanks for the help, I was able to execute my program. :smiley: