I am running MEGAN on metagenome contigs. I generated .daa and .rma files. But when I run the following code, to get the rma2info output, the file is blank.
When I run the .rma file on GUI version of MEGAN, it works. I have 300 .rma files, so I need to optimize the command line version of this code.
xvfb-run /work/student/jigyasa-arora/tools/rma2info -i 230-01_newname_scaffolds.fasta.rma -n -p -o 230-01_newname_scaffolds.fasta.rma.txt
(MEGAN version 6.15.1)