Hello,
I have 2 questions when I am running the MEGAN6_UE in command line.
In the main windows of taxonomic classification, when I want to export the image, the font in the left or right hand size is invisible, and it seems in exceed the image edge. Even when I try to set up the window size (e.g., set windowSize=3154 x 6085;
) or contract the image (contract direction=horizontal;), it does not help. How can I make all the information visualized?
In the same main windows of taxonomic, I wish to make a pie chart or bar chart, and then I showed the pie chart windows and export the image, I can only get the image of the main windows instead of the pie chart. Do you have any solution that I can export the pie chart?
Thanks for the assistance and clues.
Thanks for the response. Below is one of the scripts:
open file=‘/data/Jiaming.Zhou/SRR8305972_unicycler.rma’;
open viewer=Taxonomy;
update;
set windowSize=3154 x 6085;
collapse rank=‘Genus’;select rank=‘Genus’;
zoom what=full;
show chart drawer=BarChart data=‘Taxonomy’;
contract direction=horizontal;
exportImage file=‘/data/Jiaming.Zhou/taxonomic_viewer.svg’ format=svg visibleOnly=false textAsShapes=true title=none replace=true;
quit;
In this case, I expect to export the image of the barchart. However it export the taxonomic image. I would be very thankful for your clues and suggestion.
You need to add set context=TaxaChart;, after show chart drawer=BarChart data=‘Taxonomy’; .
open file=‘/data/Jiaming.Zhou/SRR8305972_unicycler.rma’;
open viewer=Taxonomy;
update;
set windowSize=3154 x 6085;
collapse rank=‘Genus’;select rank=‘Genus’;
zoom what=full;
show chart drawer=BarChart data=‘Taxonomy’;
set context=TaxaChart;
contract direction=horizontal;
exportImage file=‘/data/Jiaming.Zhou/taxonomic_viewer.svg’ format=svg visibleOnly=false textAsShapes=true title=none replace=true;
quit;