Problem with InterPro annotation

User Questions
1

Dear,

I’m a beginner in MEGAN. I have a problem with InterPro classification.
I have a aminoacid sequences and I performed an alignment by using blastp and downloaded XML.file.
Then uploaded that file on MEGAN and on InterPro annotation, some sequences were annotated as Cardiolipin synthase, but when I inspected that node and see the alignment I founded that the name of protein was Copper oxydase. Using COG annotation it was resulting as multicopper oxydase. Have you any idea about this?

Thank you in advance.

Best,

Salvatore

2

Could you please select the InterPro node in question and then choose the File->Extract to new Document…
menu item, and then give me access to the extracted file and I will look into this
D

3

Hi Daniel,

thank you for your reply.
Attached you can find the extract reads file from that node.

Thank you again for your help

Best

Salvatore

Lcc.fasta (679 Bytes)

4

Sorry, File->Extract to new Document… produces a new RMA file (not just a fasta file of reads), that is what I need