Hello,
I have a question. When I see my results in the inspect window it is not clear to me how Megan is assigned the reads. I thought that it only assigned a read to a specie level if it accomplish what it is stipulated in the LCA parameter window. But as you can see in the next image, for example for a contig that has two different species available (same score), it is assigned to one of them! I thought that since it has two different species with the same score, it must be placed it at genus level. Can you help with this. All my results are like this and they are wrong, since all species are overestimate .!