is there a way to combine the outputs of several MEGANIZED DAA files into one file that can be analyzed within MEGAN?
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You can open multiple datasets in a comparison document and then in the sample viewer there is a menu item that allow you to create a single file that represents the combined counts
What sub-menu is that under Daniel? I have a comparison window populated with 30 metagenomes from 15 samples but cannot find how to create a single file. I am using Ultimate version 6.21.5
You open the Samples Viewer either from the Window menu or using the toolbar item that looks like a table