Merge DAA files with long and short reads

Dear Daniel,

do you plan implementing this kind of DAA merging option? It will be useful for creating one combined (instead of two - long read/contig & remained read level files) meganized daa file that contains alignment of de novo assembled contigs and non remappable reads with low abundance. I suppose that the result should be more consistent and contains less false positives / homologies with preserved sensitivity to single reads and unassembled, shorter genome fragments.

Bests: Balázs