I ran diamond to generate ‘daa’ file. Then meganised using daa-meganizer command.
The total no. of fastq reads in the sample is “959741”. However, after maganizing it shows only “181,548” as total reads. May I know what happened to the rest?
Total reads: 181,548
With hits: 181,548
Assig. Taxonomy: 181,306
Many thanks in advance.