Hi ,
I was trying to analyze my samples using daa2rma module but encountered this error.Can you help me resolve it?
Version MEGAN Community Edition (version 6.21.16, built 28 Oct 2021)
Author(s) Daniel H. Huson
Copyright © 2021 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Loading ncbi.map: 2,302,807
Loading ncbi.tre: 2,302,811
Caught:
java.io.IOException: org.sqlite.SQLiteException: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)
at megan/megan.classification.IdMapper.loadMappingFile(IdMapper.java:158)
at megan/megan.tools.DAA2RMA6.run(DAA2RMA6.java:271)
at megan/megan.tools.DAA2RMA6.main(DAA2RMA6.java:73)
Caused by: org.sqlite.SQLiteException: [SQLITE_IOERR_LOCK] I/O error in the advisory file locking logic (disk I/O error)
at sqlite.jdbc@3.30.1/org.sqlite.core.DB.newSQLException(DB.java:941)
at sqlite.jdbc@3.30.1/org.sqlite.core.DB.newSQLException(DB.java:953)
at sqlite.jdbc@3.30.1/org.sqlite.core.DB.throwex(DB.java:918)
at sqlite.jdbc@3.30.1/org.sqlite.core.NativeDB.prepare_utf8(Native Method)
at sqlite.jdbc@3.30.1/org.sqlite.core.NativeDB.prepare(NativeDB.java:134)
at sqlite.jdbc@3.30.1/org.sqlite.core.DB.prepare(DB.java:257)
at sqlite.jdbc@3.30.1/org.sqlite.jdbc3.JDBC3Statement.execute(JDBC3Statement.java:52)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConfig.apply(SQLiteConfig.java:152)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConnection.(SQLiteConnection.java:65)
at sqlite.jdbc@3.30.1/org.sqlite.jdbc3.JDBC3Connection.(JDBC3Connection.java:28)
at sqlite.jdbc@3.30.1/org.sqlite.jdbc4.JDBC4Connection.(JDBC4Connection.java:21)
at sqlite.jdbc@3.30.1/org.sqlite.JDBC.createConnection(JDBC.java:115)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConfig.createConnection(SQLiteConfig.java:101)
at megan/megan.accessiondb.AccessAccessionMappingDatabase.(AccessAccessionMappingDatabase.java:90)
at megan/megan.accessiondb.AccessAccessionAdapter.(AccessAccessionAdapter.java:49)
at megan/megan.classification.IdMapper.loadMappingFile(IdMapper.java:153)
… 2 more
System detail that I am using is server
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 12
On-line CPU(s) list: 0-11
Thread(s) per core: 1
Core(s) per socket: 6
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 44
Model name: Intel® Xeon® CPU X5675 @ 3.07GHz
Stepping: 2
CPU MHz: 1596.000
CPU max MHz: 3192.0000
CPU min MHz: 1596.0000
BogoMIPS: 6133.58
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 12288K
NUMA node0 CPU(s): 0-5
NUMA node1 CPU(s): 6-11
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm pcid dca sse4_1 sse4_2 popcnt aes lahf_lm epb tpr_shadow vnmi flexpriority ept vpid dtherm ida arat
I encountered the same error in daa-meganizer also?
And I have a query.I want to analyze illumina soil metagenomics paierd sample. I have downloaded
megan-map-Jan2021.db.zip
megan-nucl-Jan2021.db.zip
both these files .which one should I use and why not the other one ?