MAF to DAA questions

User Questions
1

Hi,

I am confused why maf2daa need fasta file?

I aligned my contigs file using LAST and get MAF file. So what fast file I need to provide for maf2daa?

Thanks!

2

Hi,

It requires the input file you used when aligning with LAST, so the contigs in this case. It’s necessary to ensure the correct order of alignments in the resulting DAA file.

Best,
Caner