Dear community,
In order to perform sub-sampling (via bootstrap) and estimate the distribution of specific functions in a metatranscriptome I would like to extract a table that assigns a function (may that be a GO or a SEED term) to each read in my dataset.
Extracting the “opposite” table (so - the GO term is the first column and the number of reads assigned to it) is easy, but this cannot be used for sub-sampling.
Other solutions for sub-sampling are also welcome
Thanks!
Dan