Hello Daniel,
I am trying to import a comparison (csv) file in MEGAN that has taxon path in it. The file looks like:
#Datasets D1 D2 D3 D4 D5 D6 D7 D8 D9 D10 D11 D12 D13 D14 D15 D16 D17 D18 D19 D20 D21 D22 D23 D24 D25 D26 D27 D28 D29 D30 D31 D32
Bacteria;Firmicutes;Bacilli;Bacillales;Staphylococcaceae;Staphylococcus 34972 8615 34194 17713 5067 19370 51653 36554 33795 3190 90057 10293 73332
Bacteria;Actinobacteria;Actinobacteria;Corynebacteriales;Corynebacteriaceae;Corynebacterium 1 41388 4495 752 26785 59421 27556 38673 35027 3517 9632 12 49589 574
Bacteria;Firmicutes;Clostridia;Clostridiales;Family XI;Finegoldia 325 1 551 1776 3926 2097 0 4470 168 14368 0 3087 0
Bacteria;Proteobacteria;Alphaproteobacteria;Rickettsiales;Mitochondria;Penicillium solitum 0 0 403 0 0 0 0 0 0 0 0 0 45
- 871 3268 281 2726 891 1904 970 1962 426 2671 24 320 162
Bacteria;Firmicutes;Clostridia;Clostridiales;Family XI;Anaerococcus 2255 14009 51016 23965 16392 25843 7 323 978 25354 6 668 53
Bacteria;Firmicutes;Clostridia;Clostridiales;Family XI;Peptoniphilus 997 1404 3772 4657 2273 11320 5 92 216 25266 1 2859 1
Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Haemophilus 0 1168 0 0 0 0 0 0 0 0 0 0 0
Bacteria;Proteobacteria;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Tabrizicola;Haematobacter sp. BC14248 1 0 0 0 0 1 0 0 6644 25 0 0 0
Bacteria;Proteobacteria;Gammaproteobacteria;Pasteurellales;Pasteurellaceae;Aggregatibacter 0 0 10 0 0 0 0 0 0 0 0 0 0
Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Alcaligenaceae;Oligella 0 0 0 7 0 0 0 0 0 0 0 0 0
Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Proteus 0 0 0 0 0 0 0 0 0 0 0 0 0
Bacteria;Firmicutes;Clostridia;Clostridiales;Family XI;Murdochiella 8 0 0 0 44 0 0 0 0 0 0 0 0
Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Escherichia-Shigella 1 0 0 0 0 0 0 0 0 0 0 0 5
Any way to import such a file in MEGAN?
Thanks,
Suparna