Geneious output into MEGAN

User Questions
1

Hello!

I am trying to upload BLAST output from Geneious into MEGAN for analysis, and I have downloaded the BLAST output in txt, xml, and fasta formats for upload in MEGAN. However, when I try to import any of these files, MEGAN says that there are no hits (Failed).

What format should the import from Geneious be in?

Thank you,
Wendy

2

It sounds like MEGAN is able to parse the files you are using, but is not making any assignments.
Please check that you are using suitable mapping files.