I generated DAA file with diamond and generated .rma file with MEGAN’s daa2rma utility. I then ran gc-assembler as follows:
`./gc-assembler -i ../../terrapin/reads_agassizii/reads2mitgenes.rma -fun none -id ALL -t 16`
Here is the output log:
Version MEGAN Community Edition (version 6.10.0, built 18 Oct 2017) Copyright (C) 2017 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Progress: Loading MEGAN File: reads2mitgenes.rma 100% (6629.5s) Total time: 6629s Peak memory: 10.1 of 10.7G
It did not generate any output FASTA file. Am I doing anything wrong while running the gc-assembler on command line?