Functional annotation


I am using the result of blastp and a fasta file that has the magnitude of each contig (predicted protein). But, this function as well as aligned bases or read lenght does not works when I export the taxonomic result to InterPro or EGGNOG or SEED. When I see the results, It only give the numer of contigs not the information that I have in te taxonomic table. For example, I have Reads:312 Assigned:73,339 in the mode “read lengh” but in InterPor just Reads:312 assigned: 213.

Best regards,


Hi Blanca,

I just took a look at the code, application of weights to functional classifications is explicitly ruled out. However, I think it makes more sense to apply the weights also to functional classifications, so I will change this in the next release (V6_16_5)