Unfortunately, it seems that something is wrong with the Export / Exporting Alignment function, if I select several leaves at once, it only generates the files partially, randomly, like this:
In this case, I expect to see 14 outputs but only 3:
(Within each “species”, there are a mixture of complete genomes consisting of a single contig and fragments of several fragments)
What could be the solution, or is a command line version of this option expected for pipeability?
Version: MEGAN 7 Community Edition (version 7.0.10-beta, built 12 Dec 2024)
Author(s) Daniel H. Huson
Java version: 22; max memory: 0 of 256G
OS: Ubuntu 22 LTS
Thanks in advance for any ideas and help!