Export readname to taxid information


I know how to export annotations in GFF and reads counts per taxid, but is there a way to get some sort of csv file containing taxid each read was assigned to?


After taking another look at the options I found it, sorry about not finding it before.

For anyone wanting to do it from command line, the instructions is:

export what=CSV format=readName_to_taxonId separator=tab counts=assigned file=’/home/user/metagen/results/Mock_100000-bacteria.csv’;