Version MEGAN Community Edition (version 6.8.18, built 21 Jul 2017)
Version MEGAN Ultimate Edition (version 6.8.18, built 21 Jul 2017)
Collapsing the tree at a specific tax rank, then trying to export assigned counts for that given rank (nodes are selected automatically).
When I try
CSV format... -> any version of
x_to_percent only outputs numbers based on the
summarized count for the nodes in question, even though
assigned count was selected.
Also when I do
Show number of reads assigned or
Show number of reads summarized it reports the same number of the
summarized count next to the nodes.
dutchsea_count.megan (489.9 KB)
I don’t know if you still have the problem. I tried and it seems like weird bug.
What works, though, is Select -> Rank -> “Your favourite rank” and then Export…
Thanks, that shows the correct numbers for assigned/summarized even on Tree -> Show number of reads assigned or Show number of reads summarized.
Ok this bug is so weird, it’s not reporting correct numbers only on the leaves of the tree (whatever level it is collapsed or uncollapsed to), which is why it never works with
collapse tree at a specific rank since the desired rank will always be on the leaves.
For a collapsed node (leaf), assigned is interpreted as “summarized”.
For an uncollapsed node, assigned is interpreted as “assigned”