I’m trying to meganize a daa file via the command line. But I have a problem with daa-meganizer. Here is the error message I get:
xvfb-run --auto-servernum --server-num=1 megan/tools/daa-meganizer -mdb /mnt/f/megan-map-Feb2022.db -i /mnt/f/RNA_1_W.daa Picked up _JAVA_OPTIONS: -Xmx115G Version MEGAN Community Edition (version 6.24.12, built 4 Jan 2023) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 188.8.131.52 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: /mnt/f/RNA_1_W.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 80% 90% # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x00007fd67977b959, pid=896, tid=969 # # JRE version: OpenJDK Runtime Environment (184.108.40.206+1) (build 220.127.116.11+1) # Java VM: OpenJDK 64-Bit Server VM (18.104.22.168+1, mixed mode, tiered, compressed class ptrs, g1 gc, linux-amd64) # Problematic frame: # C [libc.so.6+0x18b959][thread 975 also had an error] [thread 970 also had an error] [thread 971 also had an error] [timeout occurred during error reporting in step "printing problematic frame"] after 30 s. # Core dump will be written. Default location: core.896 (may not exist) # # An error report file with more information is saved as: # /home/hyojoeng/hs_err_pid896.log [thread 974 also had an error][thread 972 also had an error] [thread 973 also had an error]# [ timer expired, abort... ] megan/tools/daa-meganizer: line 44: 896 Aborted (core dumped) $java $java_flags --module-path=$modulepath --add-modules=megan megan.tools.DAAMeganizer $options
Did I do something wrong ?
Thanks in advance