Hi MEGAN community:
I have the following error report by using daa-meganizer in MEGAN Community Edition (version 6.21.7, built 23 Jun 2021) under conda environment. Has anyone encounter the same problem?
(MEGAN) zhichao@sulfur:/slowdata/data1/test/Download_reads$ daa-meganizer -i mgm4441598.3.daa -v -mdb /slowdata/databases/megan-map-Jan2021.db > tmp
Meganizer - Prepares (‘meganizes’) a DIAMOND .daa file for use with MEGAN
Options:
Files
–in: mgm4441598.3.daa
Mode
–longReads: false
Parameters
–classify: true
–minScore: 50.0
–maxExpected: 0.01
–minPercentIdentity: 0.0
–topPercent: 10.0
–minSupportPercent: 0.05
–minSupport: 0
–minPercentReadCover: 0.0
–minPercentReferenceCover: 0.0
–minReadLength: 0
–lcaAlgorithm: naive
–lcaCoveragePercent: 100.0
–readAssignmentMode: readCount
Classification support:
–mapDB: /slowdata/databases/megan-map-Jan2021.db
Deprecated classification support:
–parseTaxonNames: true
–firstWordIsAccession: true
–accessionTags: gb| ref|
Other:
–threads: 8
–tempStoreInMemory: false
–verbose: true
Version MEGAN Community Edition (version 6.21.7, built 23 Jun 2021)
Author(s) Daniel H. Huson
Copyright © 2021 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 14.0.1
Failed to load native library:sqlite-3.30.1-0260da8d-ec19-4cd5-8d6f-fbce6d5d79ce-libsqlitejdbc.so. osinfo: Linux/x86_64
java.lang.UnsatisfiedLinkError: /tmp/sqlite-3.30.1-0260da8d-ec19-4cd5-8d6f-fbce6d5d79ce-libsqlitejdbc.so: /tmp/sqlite-3.30.1-0260da8d-ec19-4cd5-8d6f-fbce6d5d79ce-libsqlitejdbc.so: failed to map segment from shared object
Exception in thread “main” java.lang.UnsatisfiedLinkError: ‘void org.sqlite.core.NativeDB._open_utf8(byte[], int)’
at sqlite.jdbc@3.30.1/org.sqlite.core.NativeDB._open_utf8(Native Method)
at sqlite.jdbc@3.30.1/org.sqlite.core.NativeDB._open(NativeDB.java:78)
at sqlite.jdbc@3.30.1/org.sqlite.core.DB.open(DB.java:195)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConnection.open(SQLiteConnection.java:243)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConnection.(SQLiteConnection.java:61)
at sqlite.jdbc@3.30.1/org.sqlite.jdbc3.JDBC3Connection.(JDBC3Connection.java:28)
at sqlite.jdbc@3.30.1/org.sqlite.jdbc4.JDBC4Connection.(JDBC4Connection.java:21)
at sqlite.jdbc@3.30.1/org.sqlite.JDBC.createConnection(JDBC.java:115)
at sqlite.jdbc@3.30.1/org.sqlite.SQLiteConfig.createConnection(SQLiteConfig.java:101)
at megan/megan.accessiondb.AccessAccessionMappingDatabase.(AccessAccessionMappingDatabase.java:89)
at megan/megan.accessiondb.AccessAccessionMappingDatabase.getContainedClassificationsIfDBExists(AccessAccessionMappingDatabase.java:345)
at megan/megan.tools.DAAMeganizer.run(DAAMeganizer.java:213)
at megan/megan.tools.DAAMeganizer.main(DAAMeganizer.java:65)