Hi, I have a blast XML file generated by -outfmt 16 of Blastn. The original XML flavour isn’t valid XML for xquery is why I used the new format. Megan can’t parse this ‘new’ output format to my knowledge. Is this a known issue?
please give me access to a small example file and I’ll look into supporting this.
test.xml (187.9 KB)
I ran a test with -outfmt 16 on a yacon necrotic mottle virus accession. I hope this is useful to you.
Thank you for the file. This looks like a new XML format for BLAST output, internally labeled “BlastXML2”. I will look into writing a parser for this.