I would like to export functional table (KEGG, INTERPRO2GO, …) in a biom format to be able to use with R.
I first check the table with biom-validate
but then when I tried to load the biom table in R I got the following message:
I also tried with another dataset and I was able to load the biom table into R:
It seems like because some KO are shared among several pathways it does not accept duplicates ids. Any idea how to format the biom table to solve that? Add a random id?
Thanks a lot for your help.