Hello,
I want to distribution of species annotation information for gene sequences. At first, I use the blastn to do blast use NT database.
Then, I want to import the xml format data into the MEGA6, use the LCA algorithm.How do I set the LCA parameters? And export the informations about the classification information.
Like this:
- a fasta file:
gene1
…
gene2
…
gene3
…
- use the blastn get a xml document, -max_target_seqs 5
- import the xml document to the magn6, and use the LCA algorithm to get a best one taxonomy information.
How can I set the LCA parameters and export a document containing taxonomy information?
Like this:
gene1 taxonomy
…
gene2 taxonomy
…
gene3 taxonomy
…