We sequenced a metagenome and now want to know what species with how many reads were found overall. If possible in a table like this:
Pseudomonas fluorescens 24000
Escherichia coli 16000
We first used blastn to get all the species in our metagenome and are now importing the blast output to MEGAN.
Can anyone please help me out with that? I can’t find a way to get that kind of table although all information is available in seperate graphics…
Hello. I have a same problem. I ran Illumina for metagenomic analyses. However, I could not find out how to use MEGAN on the Illumina dataset. Can you provide hands-on exercise? I am pleased to visit Germany, for a few days.